work/3599843951_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843951_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843951_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843951_sv1	28185060	47712	0.001693	22474495	0.20261	11208381	0.755686	0.242191	0.87339	0.12661	216	319	474	10890755	0.971662	9511877	1378878	16983668	5443115	350.081545	122.412331	5710565	0.976928	0.940114	0.940114	4220602200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	166239	0.172194	0.0	0.178344	0.208491	0.262901	0.370519	0.868485	1.20485	1.021086	0.905648	1.000169	0.992548	0.95826	1.105455	1.039206	0.922233	0.625708	0.317393	0.389114	0.0	0.0	0.0	238.490034	0.316017	1509.0	66.0	95.0	240.0	391.0	446.0	0.059948	0.999317	6345729	5984808	1.00	0.940052	6366463	0.0101	743	-1775.9228	170.1164	6388832

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