work/3599843953_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843953_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843953_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843953_sv1	35596464	55272	0.001553	28272696	0.205744	14104158	0.765097	0.232948	0.877391	0.122609	202	309	467	13732204	0.973628	12048510	1683694	21631348	6586076	340.421659	124.607208	7323768	0.977193	0.9408	0.9408	5331178800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	209153	0.166838	0.0	0.166399	0.206149	0.26161	0.37392	0.87248	1.211857	1.024379	0.904693	0.993514	0.986814	0.953651	1.103892	1.044995	0.939091	0.633253	0.312852	0.356506	0.0	0.0	0.0	298.135891	0.307405	1115.0	86.0	123.0	301.0	484.0	551.0	0.019053	0.998923	6346783	6245162	1.00	0.980947	6366463	0.004	638	-1211.0532	40.8466	6388832

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