work/3599843955_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843955_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843955_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843955_sv1	34726016	75740	0.002181	27225863	0.215981	13569459	0.750678	0.24654	0.875101	0.124899	222	326	481	13107207	0.965934	11470132	1637075	20437862	6712261	356.648321	122.333031	7500153	0.976016	0.93785	0.93785	5197541400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	200180	0.155979	0.0	0.170281	0.228829	0.28519	0.381151	0.876932	1.207974	1.021137	0.905005	0.997837	0.994357	0.957203	1.096444	1.03642	0.910713	0.616987	0.315662	0.343244	0.0	0.0	0.0	289.255272	0.316382	1351.0	81.0	115.0	293.0	473.0	539.0	0.0266	0.999172	6346916	6197112	1.00	0.9734	6366463	0.0119	677	-2376.4606	266.8507	6388832

2 rows