work/3599843956_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843956_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843956_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843956_sv1	37383500	64030	0.001713	28927860	0.226186	14426628	0.754717	0.243069	0.878275	0.121725	220	325	481	13949919	0.966956	12251862	1698057	21832354	7031476	355.941801	122.955971	8455640	0.975972	0.93764	0.93764	5597920500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	225914	0.069584	0.0	0.101891	0.122473	0.24366	0.360661	0.856654	1.185273	0.987573	0.902919	1.007984	1.025563	0.995407	1.120406	1.053979	0.901215	0.629532	0.301767	0.354547	0.0	0.0	0.0	308.411083	0.354896	1829.0	71.0	111.0	305.0	528.0	600.0	0.034889	0.998725	6365738	6144342	1.00	0.965111	6366463	0.004	726	-1476.7442	53.7575	6388832

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