work/3599843958_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843958_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843958_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843958_sv1	36277306	62500	0.001723	28641070	0.210496	14284100	0.758895	0.238922	0.876838	0.123162	210	316	473	13837641	0.968744	12133371	1704270	21735575	6842995	346.912947	123.578239	7636236	0.976065	0.93795	0.93795	5432220900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	211101	0.144027	0.0	0.115135	0.196503	0.265388	0.363627	0.863636	1.201476	1.02069	0.905157	0.999234	0.997242	0.961049	1.108173	1.042416	0.926575	0.627757	0.306411	0.3398	0.0	0.0	0.0	303.569407	0.310601	1451.0	87.0	124.0	307.0	493.0	560.0	0.018864	0.998877	6345918	6246366	1.00	0.981136	6366463	0.0073	740	-1918.5103	143.1655	6388832

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