work/3599843961_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843961_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843961_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843961_sv1	32810468	57817	0.001762	25760681	0.214864	12846375	0.756203	0.241552	0.879015	0.120985	224	328	483	12486040	0.97195	10975412	1510628	19480317	6222547	358.541279	122.198952	7049787	0.976768	0.939345	0.939345	4912897650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	191324	0.147198	0.0	0.168295	0.19356	0.261237	0.370764	0.869099	1.206554	1.024071	0.907288	1.000563	0.991387	0.955764	1.100775	1.03435	0.914748	0.601809	0.30837	0.347138	0.0	0.0	0.0	276.299871	0.317057	1238.0	76.0	109.0	279.0	453.0	515.0	0.034055	0.999274	6345103	6149654	1.00	0.965945	6366463	0.0058	606	-1296.1178	72.6773	6388832

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