work/3599843962_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843962_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843962_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843962_sv1	28250750	50503	0.001788	22303196	0.210527	11121301	0.757941	0.239794	0.87578	0.12422	213	317	472	10785577	0.969813	9445792	1339785	16904512	5348181	347.893728	122.131729	5947554	0.976564	0.939565	0.939565	4230037050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	164676	0.193038	0.0	0.15774	0.208906	0.275343	0.37488	0.86624	1.202247	1.022836	0.906119	0.999398	0.997828	0.961684	1.099787	1.031494	0.910667	0.610707	0.309176	0.260326	0.0	0.0	0.0	237.151649	0.315411	1531.0	66.0	95.0	238.0	390.0	443.0	0.059711	0.999569	6346552	5986312	1.00	0.940289	6366463	0.0077	544	-1169.8899	86.1435	6388832

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