work/3599843963_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843963_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843963_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843963_sv1	40330798	70316	0.001743	30828298	0.235614	15373539	0.745863	0.251856	0.873356	0.126644	230	334	489	14862857	0.966782	12980564	1882293	22993684	7764298	364.813186	122.621071	9502500	0.976244	0.937937	0.937937	6039072300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	227510	0.199928	0.0	0.17978	0.231282	0.294576	0.388769	0.892389	1.218803	1.021838	0.900382	0.994386	0.990311	0.953825	1.089067	1.025192	0.904807	0.621202	0.320039	0.393656	0.0	0.0	0.0	327.989203	0.318276	1544.0	91.0	128.0	332.0	535.0	608.0	0.015464	0.997903	6346845	6268009	1.00	0.984536	6366463	0.0114	582	-2057.9684	236.6997	6388832

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