work/3599843964_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843964_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843964_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843964_sv1	28307418	47026	0.001661	22351458	0.210403	11147662	0.75402	0.243876	0.874644	0.125356	215	323	482	10836744	0.972109	9478292	1358452	16853442	5450990	353.920197	125.677811	5955960	0.976784	0.939796	0.939796	4239058800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	166855	0.167735	0.0	0.179873	0.204066	0.281068	0.38301	0.8712	1.205421	1.0073	0.908844	1.00175	1.000613	0.966828	1.099113	1.03923	0.914376	0.616606	0.318444	0.366368	0.0	0.0	0.0	234.593613	0.325535	1325.0	64.0	93.0	235.0	390.0	447.0	0.063912	0.999348	6346136	5959572	1.00	0.936088	6366463	0.0072	716	-1484.5799	95.9486	6388832

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