work/3599843966_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843966_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843966_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843966_sv1	30495920	50741	0.001664	24088701	0.210101	12014136	0.76263	0.235264	0.876617	0.123383	205	310	466	11663036	0.970776	10224016	1439020	18370761	5667199	341.589184	123.595184	6407219	0.976669	0.939792	0.939792	4566776850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	177551	0.184709	0.0	0.155196	0.219349	0.268882	0.368963	0.863415	1.204017	1.021747	0.909454	1.000308	0.99608	0.958034	1.100751	1.035741	0.914987	0.610952	0.297308	0.284951	0.0	0.0	0.0	254.622882	0.311983	1171.0	72.0	104.0	256.0	417.0	480.0	0.041984	0.999301	6346914	6099173	1.00	0.958016	6366463	0.0107	687	-1842.4818	177.9947	6388832

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