work/3599843967_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843967_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843967_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843967_sv1	34456736	65236	0.001893	27140535	0.21233	13532322	0.750336	0.247261	0.882798	0.117202	237	340	493	13058059	0.964953	11527622	1530437	20364514	6710785	369.728106	120.781082	7316201	0.97529	0.935032	0.935032	5158725000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	201240	0.164521	0.0	0.168589	0.210971	0.281909	0.370906	0.874782	1.207778	1.022753	0.904284	0.997974	0.994532	0.961857	1.093807	1.031306	0.903567	0.621478	0.302052	0.388703	0.0	0.0	0.0	292.259131	0.322611	1498.0	78.0	112.0	296.0	479.0	546.0	0.030201	0.998466	6345714	6174188	1.00	0.969799	6366463	0.0018	637	-865.2874	10.4149	6388832

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