work/3599843970_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843970_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843970_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843970_sv1	29958614	52065	0.001738	23495765	0.215726	11716942	0.749937	0.247848	0.87538	0.12462	228	332	486	11349067	0.968603	9934745	1414322	17620331	5823369	361.788546	122.088486	6462849	0.97639	0.938429	0.938429	4485982350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	174072	0.177869	0.0	0.148486	0.195829	0.275156	0.367186	0.858424	1.200912	1.02274	0.910812	1.005037	0.999029	0.957849	1.099964	1.028764	0.89917	0.594723	0.290676	0.419749	0.0	0.0	0.0	250.907853	0.322508	1006.0	67.0	97.0	252.0	416.0	474.0	0.054538	0.999147	6345452	6019250	1.00	0.945462	6366463	0.0043	675	-1141.5378	36.6956	6388832

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