work/3599843971_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843971_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843971_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843971_sv1	32574022	55308	0.001698	25920652	0.204254	12927708	0.757074	0.240792	0.87518	0.12482	215	319	475	12549725	0.970762	10983271	1566454	19623851	6241493	350.064145	122.894516	6653370	0.97695	0.939987	0.939987	4877807100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	190671	0.191137	0.0	0.188248	0.223987	0.27725	0.379362	0.874895	1.211103	1.024141	0.901975	0.995384	0.989594	0.953567	1.105021	1.040223	0.922378	0.621345	0.300014	0.304278	0.0	0.0	0.0	275.623669	0.314053	1276.0	77.0	110.0	278.0	450.0	514.0	0.031713	0.999054	6346490	6164566	1.00	0.968287	6366463	0.0031	743	-1236.0743	28.6529	6388832

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