work/3599843972_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843972_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843972_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843972_sv1	34834190	61328	0.001761	27140232	0.220874	13534381	0.755128	0.242613	0.878555	0.121445	223	327	481	13103093	0.968134	11511788	1591305	20494338	6584566	357.289673	121.895706	7693958	0.976355	0.938583	0.938583	5215929300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	199774	0.174674	0.0	0.170207	0.227493	0.289517	0.383803	0.881547	1.21366	1.02013	0.902465	0.993179	0.991068	0.958929	1.099395	1.03721	0.903196	0.617763	0.303399	0.341308	0.0	0.0	0.0	290.897321	0.319285	1325.0	80.0	115.0	294.0	478.0	552.0	0.026999	0.997975	6344862	6194572	1.00	0.973001	6366463	0.016	683	-2866.4952	390.0091	6388832

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