work/3599843973_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843973_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843973_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843973_sv1	33443644	56337	0.001685	26413609	0.210205	13173455	0.748361	0.249506	0.87801	0.12199	240	341	494	12793902	0.971188	11233178	1560724	19766911	6590361	371.702081	120.92598	7030035	0.976639	0.938922	0.938922	5008096050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	195793	0.193016	0.0	0.165375	0.236693	0.287995	0.379126	0.879433	1.206972	1.024347	0.903656	0.998024	0.9852	0.955644	1.103941	1.040107	0.922379	0.622821	0.313081	0.346678	0.0	0.0	0.0	284.343279	0.322547	1389.0	76.0	109.0	288.0	469.0	532.0	0.034812	0.999475	6346066	6144835	1.00	0.965188	6366463	0.0072	740	-1841.2124	129.2777	6388832

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