work/3599843974_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843974_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843974_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843974_sv1	28536500	53121	0.001862	22878515	0.198272	11407617	0.760175	0.237503	0.878806	0.121194	216	320	474	11088470	0.972023	9744617	1343853	17391679	5433715	350.633272	122.130928	5657985	0.97675	0.939962	0.939962	4272506850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	171057	0.165428	0.0	0.130371	0.195851	0.257589	0.366223	0.850536	1.193104	1.022601	0.910567	1.004463	0.995405	0.962678	1.111917	1.043934	0.925016	0.621682	0.294703	0.346194	0.0	0.0	0.0	244.752929	0.317726	1147.0	67.0	97.0	246.0	404.0	460.0	0.055238	0.999624	6345638	6014791	1.00	0.944762	6366463	0.003	557	-767.5675	19.8012	6388832

2 rows