work/3599843977_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843977_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843977_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843977_sv1	28932434	47756	0.001651	22984403	0.205583	11463858	0.759506	0.238416	0.876262	0.123738	225	322	467	11189824	0.976096	9805220	1384604	17456798	5479849	351.211723	115.597183	5948031	0.977835	0.942662	0.942662	4332701700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	169346	0.218915	0.0	0.200627	0.252387	0.276977	0.395469	0.890906	1.233662	1.036775	0.909185	0.991	0.971034	0.93155	1.077902	1.020434	0.913182	0.611872	0.293219	0.380815	0.0	0.0	0.0	247.695392	0.315116	1304.0	69.0	98.0	251.0	402.0	456.0	0.052686	0.999423	6346271	6031040	1.00	0.947314	6366463	0.0116	703	-1902.375	203.0949	6388832

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