work/3599843979_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843979_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843979_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843979_sv1	33705288	56236	0.001668	26593895	0.210987	13263768	0.758239	0.239646	0.878226	0.121774	222	324	476	12903000	0.9728	11331754	1571246	20164533	6373126	354.187456	120.336143	7111393	0.976945	0.940238	0.940238	5047357800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	198444	0.15451	0.0	0.166683	0.205148	0.269131	0.368967	0.87634	1.210151	1.025725	0.907338	0.998747	0.987145	0.948179	1.097856	1.043167	0.932986	0.615155	0.29912	0.383933	0.0	0.0	0.0	285.580774	0.315352	1229.0	79.0	113.0	289.0	466.0	530.0	0.028243	0.999244	6346321	6186652	1.00	0.971757	6366463	0.0042	550	-1017.3095	35.4417	6388832

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