work/3599846378_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846378_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846378_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846378_sv1	35611462	57985	0.001628	28287346	0.205667	14109789	0.763291	0.234659	0.878331	0.121669	210	316	472	13749303	0.974451	12076444	1672859	21591478	6637883	346.585102	123.593636	7324116	0.977569	0.941537	0.941537	5333021550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	211687	0.19545	0.0	0.159953	0.220058	0.271456	0.37654	0.865566	1.201753	1.024847	0.904	0.998355	0.990737	0.957745	1.108521	1.045205	0.940161	0.62384	0.30964	0.338312	0.0	0.0	0.0	301.032576	0.312134	1586.0	86.0	122.0	303.0	492.0	559.0	0.019856	0.998945	6347062	6240051	1.00	0.980144	6366463	0.0106	715	-2368.2365	240.0062	6388832

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