work/3599846380_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846380_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846380_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846380_sv1	33677114	60777	0.001805	26085445	0.225425	13007266	0.752213	0.245458	0.872868	0.127132	217	323	479	12603131	0.96893	11000870	1602261	19621798	6402870	353.59409	123.712883	7591669	0.976799	0.940065	0.940065	5042450550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	191471	0.184192	0.0	0.187447	0.223119	0.28368	0.390128	0.895136	1.232755	1.031784	0.905356	0.98923	0.978283	0.938073	1.079644	1.02171	0.905395	0.608996	0.292235	0.305125	0.0	0.0	0.0	276.34833	0.313443	1638.0	78.0	111.0	280.0	447.0	509.0	0.03166	0.999028	6346851	6164903	1.00	0.96834	6366463	0.0104	647	-1913.8265	208.5467	6388832

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