work/3599846382_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846382_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846382_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846382_sv1	35619970	62720	0.001761	27364946	0.231753	13645841	0.747925	0.249783	0.879214	0.120786	239	342	496	13218871	0.968711	11622220	1596651	20466933	6835293	372.029428	122.025291	8255024	0.97648	0.938607	0.938607	5333587500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	200959	0.181894	0.0	0.181013	0.221701	0.287092	0.390025	0.901887	1.233322	1.025753	0.899561	0.98817	0.97778	0.946656	1.087255	1.024797	0.902034	0.605385	0.306281	0.331196	0.0	0.0	0.0	293.749667	0.3219	1429.0	80.0	113.0	298.0	478.0	546.0	0.028414	0.998497	6346254	6185567	1.00	0.971586	6366463	0.0039	604	-1120.4079	38.0568	6388832

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