work/3599846386_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846386_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846386_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846386_sv1	39359064	66645	0.001693	30702272	0.219944	15312802	0.763752	0.234077	0.878021	0.121979	209	313	468	14901196	0.97312	13083566	1817630	23448933	7186694	344.177917	122.791397	8656792	0.977649	0.942062	0.942062	5893862850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	228738	0.166474	0.0	0.154555	0.215894	0.262924	0.37377	0.877582	1.215243	1.023206	0.902363	0.995863	0.98733	0.952139	1.101584	1.03774	0.933279	0.623076	0.307747	0.359171	0.0	0.0	0.0	326.980853	0.311453	2633.0	93.0	133.0	331.0	531.0	607.0	0.013349	0.997675	6346313	6281480	1.00	0.986651	6366463	0.008	659	-1812.3658	134.2882	6388832

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