work/3599846387_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846387_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846387_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846387_sv1	31110412	58973	0.001896	24448630	0.214134	12189674	0.757834	0.239753	0.878124	0.121876	223	324	472	11830555	0.970539	10388700	1441855	18528014	5861643	353.050157	117.708382	6661782	0.976949	0.940443	0.940443	4657715850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	181540	0.232664	0.0	0.189634	0.251562	0.272649	0.38486	0.874017	1.209373	1.024225	0.903209	1.000898	0.988493	0.955383	1.098022	1.035283	0.914036	0.613444	0.310648	0.362256	0.0	0.0	0.0	263.298553	0.3196	1637.0	73.0	104.0	265.0	435.0	499.0	0.042196	0.998853	6346825	6097822	1.00	0.957804	6366463	0.0075	641	-1470.5316	99.5747	6388832

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