work/3599846392_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846392_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846392_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846392_sv1	35517038	61551	0.001733	27404799	0.228404	13666293	0.753196	0.244558	0.878201	0.121799	228	331	484	13251944	0.969681	11637870	1614074	20641191	6702057	361.345695	121.369385	8112239	0.976339	0.938592	0.938592	5318323050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	216612	0.087479	0.0	0.118251	0.137153	0.242841	0.360018	0.84467	1.179939	0.989431	0.906775	1.010991	1.023536	0.98966	1.126966	1.070202	0.919517	0.630762	0.308218	0.411459	0.0	0.0	0.0	294.266197	0.361909	2147.0	65.0	104.0	290.0	510.0	586.0	0.043411	0.997802	6364850	6090087	1.00	0.956589	6366463	0.0053	606	-1450.7853	69.5815	6388832

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