work/3599846393_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846393_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846393_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846393_sv1	33757708	65029	0.001926	26213507	0.223481	13068824	0.758343	0.239177	0.872774	0.127226	206	311	466	12668845	0.969394	11057034	1611811	19878820	6269658	341.632795	122.207016	7544201	0.976448	0.939635	0.939635	5053901850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	193847	0.176669	0.0	0.155693	0.205821	0.267911	0.371562	0.872146	1.207417	1.020123	0.906195	1.000461	0.997913	0.958495	1.097969	1.027418	0.900139	0.611668	0.290076	0.290875	0.0	0.0	0.0	276.611672	0.310804	1315.0	79.0	113.0	279.0	451.0	515.0	0.028496	0.998557	6346255	6185047	1.00	0.971504	6366463	0.0058	599	-1200.1828	68.858	6388832

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