work/3599846461_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846461_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846461_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846461_sv1	28728296	43794	0.001524	22877823	0.203648	11412274	0.72164	0.276446	0.866307	0.133692	227	362	547	10916291	0.95654	9456865	1459426	16509554	6324475	391.303951	145.800964	5850473	0.972925	0.928821	0.928821	4302675300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	169587	0.147061	0.0	0.141069	0.186193	0.288847	0.346122	0.802242	1.141235	0.997079	0.911975	1.029805	1.052226	1.019547	1.128894	1.017994	0.819231	0.561291	0.275758	0.350767	0.0	0.0	0.0	230.427197	0.329175	1087.0	59.0	87.0	230.0	388.0	443.0	0.078349	0.999537	6346094	5867656	1.00	0.921651	6366463	0.0074	555	-1081.8462	82.3956	6388832

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