work/3599846463_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846463_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846463_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846463_sv1	38766608	60350	0.001557	31111597	0.197464	15520455	0.748744	0.249316	0.865757	0.134243	213	321	480	15105661	0.973274	13077825	2027836	23294636	7756611	352.260939	125.878593	7655011	0.976961	0.940133	0.940133	5805938700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	232949	0.145599	0.0	0.144369	0.195226	0.258805	0.368184	0.860501	1.195928	1.016618	0.906546	1.006917	0.999595	0.964194	1.10758	1.038354	0.927147	0.62542	0.317213	0.357641	0.0	0.0	0.0	325.648873	0.313608	1591.0	91.0	131.0	329.0	533.0	607.0	0.014628	0.997883	6345624	6273332	1.00	0.985372	6366463	0.0099	635	-1971.4261	184.2199	6388832

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