work/3599846464_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846464_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846464_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846464_sv1	34910112	61141	0.001751	27917911	0.200292	13922960	0.745929	0.251881	0.867967	0.132033	223	327	482	13500301	0.969643	11717821	1782480	20824789	7031981	357.799914	122.881691	6992201	0.976161	0.938307	0.938307	5227345650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	207421	0.156223	0.0	0.154417	0.217559	0.27848	0.366416	0.858339	1.200821	1.020044	0.908275	1.006499	1.005856	0.963506	1.09206	1.028116	0.885017	0.603219	0.28084	0.31064	0.0	0.0	0.0	294.780483	0.319196	1441.0	81.0	116.0	297.0	485.0	556.0	0.02591	0.998312	6347016	6201510	1.00	0.97409	6366463	0.0157	607	-2500.6002	358.3505	6388832

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