work/3599846465_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846465_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846465_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846465_sv1	30742598	59254	0.001927	25511976	0.170142	12720874	0.745759	0.251918	0.862606	0.137394	216	320	476	12383781	0.973501	10682324	1701457	19025797	6426925	351.977995	123.254143	5230622	0.976389	0.938896	0.938896	4602501600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	189537	0.16265	0.0	0.17246	0.20924	0.261906	0.361865	0.845439	1.185946	1.019411	0.911179	1.010786	1.002944	0.967223	1.108159	1.043371	0.922889	0.626046	0.292401	0.369705	0.0	0.0	0.0	267.687552	0.317007	1513.0	74.0	106.0	269.0	440.0	500.0	0.03829	0.999096	6345670	6122693	1.00	0.96171	6366463	0.0028	608	-912.3064	18.1264	6388832

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