work/3599846468_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846468_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846468_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846468_sv1	33603890	55299	0.001646	27477187	0.182321	13705935	0.750766	0.247221	0.862568	0.137432	202	311	472	13361306	0.974855	11525032	1836274	20628938	6792950	343.167737	127.392387	6126703	0.976743	0.940104	0.940104	5032288650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	206108	0.170576	0.0	0.153423	0.192934	0.250573	0.358557	0.843333	1.190477	1.017453	0.910486	1.008992	1.002812	0.965302	1.114369	1.042758	0.925197	0.624165	0.301946	0.348776	0.0	0.0	0.0	284.47462	0.309914	1668.0	81.0	116.0	286.0	466.0	528.0	0.02517	0.999067	6345969	6206222	1.00	0.97483	6366463	0.0136	707	-2640.559	312.3633	6388832

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