work/3599846470_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846470_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846470_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846470_sv1	38527808	66385	0.001723	31090907	0.193027	15506700	0.749658	0.248207	0.866454	0.133546	211	318	477	15065936	0.971576	13053943	2011993	23307548	7716974	349.873425	125.482895	7436901	0.976159	0.938098	0.938098	5769213450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	231562	0.211341	0.0	0.181149	0.225087	0.278123	0.371424	0.849541	1.18715	1.015082	0.908936	1.008039	1.004765	0.970333	1.11348	1.040152	0.91936	0.61784	0.302382	0.328027	0.0	0.0	0.0	325.088905	0.313557	1367.0	91.0	131.0	328.0	533.0	607.0	0.01493	0.998216	6346808	6271411	1.00	0.98507	6366463	0.0094	587	-2037.0943	193.9491	6388832

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