work/3599846471_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846471_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846471_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846471_sv1	14957542	26534	0.001774	11752085	0.214304	5858429	0.657973	0.33977	0.867233	0.132767	264	436	645	5151348	0.879305	4467420	683928	7732550	3993001	458.739179	169.658417	3205457	0.961167	0.896863	0.896863	2239651200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	80625	0.105406	0.0	0.131278	0.166291	0.419068	0.299545	0.713382	1.015619	0.937213	0.917092	1.069044	1.193702	1.145523	1.145465	1.023395	0.626585	0.534717	0.213002	0.379461	0.0	0.0	0.0	109.949025	0.353431	460.0	24.0	37.0	109.0	192.0	225.0	0.43159	1.0	6226567	3618761	0.98	0.56841	6366463	0.0111	584	-720.1663	71.4997	6388832

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