work/3599846473_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846473_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846473_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846473_sv1	29828948	49246	0.001651	24085874	0.192534	12013345	0.750978	0.246977	0.866914	0.133086	210	315	473	11664572	0.970968	10112184	1552388	18087969	5948659	346.739248	124.251198	5743074	0.976255	0.938989	0.938989	4466955300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	179699	0.180691	0.0	0.154197	0.205107	0.273793	0.372906	0.85864	1.200507	1.023115	0.913285	1.006973	0.998819	0.959831	1.096063	1.012708	0.885372	0.587281	0.289015	0.315812	0.0	0.0	0.0	252.288406	0.313168	1207.0	70.0	102.0	254.0	412.0	469.0	0.045832	0.999311	6345995	6074678	1.00	0.954168	6366463	0.0	729	-267.9214	-0.073	6388832

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