work/3599846474_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846474_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846474_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846474_sv1	38286152	65726	0.001717	30935703	0.191987	15429555	0.748065	0.24981	0.865201	0.134799	217	321	476	15016175	0.973209	12992008	2024167	23141926	7728051	351.845482	122.477173	7350449	0.976832	0.939707	0.939707	5733063900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	230084	0.177288	0.0	0.159393	0.200402	0.261646	0.372908	0.869395	1.20762	1.01827	0.9072	0.999392	0.994568	0.956405	1.103295	1.036903	0.929009	0.629472	0.302852	0.379546	0.0	0.0	0.0	325.850656	0.313217	1577.0	92.0	131.0	329.0	531.0	600.0	0.014219	0.998575	6346656	6275936	1.00	0.985781	6366463	0.005	673	-1640.0611	69.853	6388832

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