work/3599846475_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846475_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846475_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846475_sv1	35588626	61602	0.001731	28852301	0.189283	14390150	0.75003	0.247835	0.86601	0.13399	221	319	467	14008098	0.97345	12131149	1876949	21640075	7150624	349.292967	117.5867	6736325	0.977196	0.940867	0.940867	5329053600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	215901	0.1627	0.0	0.152391	0.189903	0.261251	0.373164	0.866381	1.204214	1.027407	0.911162	1.00507	0.990156	0.948741	1.093944	1.034518	0.923467	0.621571	0.317205	0.288647	0.0	0.0	0.0	306.632352	0.312731	1457.0	86.0	123.0	311.0	499.0	562.0	0.019659	0.999099	6345570	6241305	1.00	0.980341	6366463	0.0045	738	-1471.3136	63.7766	6388832

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