work/3599846476_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846476_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846476_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846476_sv1	36064480	57301	0.001589	28679056	0.204784	14305644	0.748218	0.249784	0.867087	0.132913	226	326	474	13923130	0.973261	12072567	1850563	21458184	7163571	355.224498	117.740982	7385424	0.977223	0.940936	0.940936	5401076850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	212428	0.164299	0.0	0.155465	0.201263	0.268717	0.380255	0.880643	1.216604	1.027015	0.90558	1.001611	0.985299	0.949035	1.090588	1.02191	0.897765	0.593953	0.288722	0.358631	0.0	0.0	0.0	305.64074	0.318582	1526.0	84.0	120.0	309.0	501.0	568.0	0.021614	0.998555	6346045	6228857	1.00	0.978386	6366463	0.0054	532	-1111.8819	58.7991	6388832

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