work/3599846483_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846483_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846483_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846483_sv1	28174518	46459	0.001649	22972817	0.184624	11458262	0.747233	0.250744	0.865535	0.134465	223	323	475	11150898	0.973175	9651492	1499406	17166054	5760304	354.100064	120.299484	5201701	0.976894	0.93997	0.93997	4219208850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	171644	0.177894	0.0	0.161059	0.199089	0.272044	0.372657	0.861775	1.193264	1.018612	0.909511	1.00705	0.999126	0.963359	1.102541	1.041725	0.917643	0.617071	0.298067	0.300792	0.0	0.0	0.0	243.020464	0.318627	1081.0	66.0	95.0	245.0	400.0	453.0	0.058775	0.999483	6346755	5992276	1.00	0.941225	6366463	0.0106	647	-1641.1995	166.2886	6388832

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