work/3599846486_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846486_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846486_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846486_sv1	30503596	52723	0.001728	24597623	0.193616	12267272	0.739705	0.258151	0.864259	0.135741	218	330	495	11872735	0.967838	10261115	1611620	18194988	6349912	361.751376	129.715317	5905973	0.975446	0.936366	0.936366	4567630950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	182238	0.152213	0.0	0.148577	0.198369	0.270723	0.367138	0.856567	1.195137	1.018172	0.908505	1.008017	1.006525	0.968397	1.10029	1.019553	0.890905	0.598323	0.280975	0.336635	0.0	0.0	0.0	254.966659	0.31665	1019.0	70.0	101.0	257.0	417.0	475.0	0.047464	0.999475	6345763	6064287	1.00	0.952536	6366463	0.0058	646	-1278.3702	71.4724	6388832

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