work/3599846490_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846490_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846490_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846490_sv1	25762776	39857	0.001547	21200791	0.177077	10575861	0.746083	0.252037	0.867516	0.132484	230	328	478	10281473	0.972164	8919341	1362132	15817557	5343377	358.822056	118.418175	4561985	0.977234	0.940478	0.940478	3858437850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	158001	0.205887	0.0	0.199187	0.245153	0.284434	0.381292	0.867254	1.1943	1.024163	0.9112	1.005911	0.993686	0.960037	1.097641	1.029356	0.910807	0.614254	0.295517	0.355734	0.0	0.0	0.0	225.207362	0.319798	979.0	61.0	88.0	227.0	370.0	420.0	0.079226	0.999799	6346165	5862076	1.00	0.920774	6366463	0.0095	685	-1541.3582	143.7165	6388832

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