work/3599846492_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846492_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846492_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846492_sv1	34461762	54650	0.001586	28049542	0.186068	13992566	0.74919	0.248862	0.864388	0.135612	213	318	473	13620069	0.973379	11773024	1847045	21014423	6980469	348.686731	122.932877	6412220	0.977363	0.941119	0.941119	5161066800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	209448	0.175785	0.0	0.169343	0.214935	0.273551	0.371469	0.857801	1.199498	1.021463	0.910161	1.005997	0.998862	0.957581	1.099626	1.034546	0.91513	0.617952	0.29372	0.342367	0.0	0.0	0.0	294.442824	0.312616	1356.0	83.0	119.0	297.0	481.0	544.0	0.023089	0.998705	6344986	6219466	1.00	0.976911	6366463	0.0178	630	-2784.7627	428.165	6388832

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