work/3599846495_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846495_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846495_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846495_sv1	29499172	51916	0.00176	23873709	0.190699	11905724	0.749456	0.24837	0.866471	0.133529	217	319	471	11564792	0.971364	10020555	1544237	17892287	5929506	349.699586	120.78437	5625463	0.976535	0.939439	0.939439	4417088400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	177632	0.215645	0.0	0.174747	0.228965	0.281041	0.374699	0.861783	1.195064	1.022479	0.914065	1.007175	1.000086	0.957995	1.093122	1.033005	0.897061	0.610639	0.308216	0.314438	0.0	0.0	0.0	252.036731	0.31642	1150.0	69.0	100.0	254.0	414.0	470.0	0.048739	0.999622	6344742	6056169	1.00	0.951261	6366463	0.0067	751	-1554.4797	92.3753	6388832

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