work/3599846498_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846498_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846498_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846498_sv1	26985790	41489	0.001537	21239752	0.212928	10594635	0.728036	0.27001	0.865306	0.134694	223	347	523	10148931	0.957931	8781930	1367001	15463314	5734949	377.815523	138.333344	5746038	0.973682	0.931333	0.931333	4041645150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	157134	0.137687	0.0	0.149306	0.192878	0.287991	0.347213	0.816062	1.150213	1.00376	0.913325	1.026831	1.044165	1.003646	1.118899	1.02223	0.829414	0.568006	0.266908	0.34625	0.0	0.0	0.0	216.181594	0.324809	1140.0	57.0	83.0	216.0	362.0	413.0	0.091199	0.999684	6345466	5785846	1.00	0.908801	6366463	0.0083	584	-1183.9825	97.3584	6388832

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