work/3599846499_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846499_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846499_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846499_sv1	31434170	50847	0.001618	25344227	0.193736	12641597	0.748242	0.249752	0.865758	0.134242	214	319	476	12267395	0.970399	10620593	1646802	18963605	6329775	350.419605	123.935326	6089943	0.976404	0.938823	0.938823	4707498450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	187922	0.186428	0.0	0.1739	0.219119	0.268899	0.370684	0.855143	1.195905	1.021009	0.913066	1.006799	1.00443	0.962712	1.095855	1.022336	0.891854	0.604288	0.295536	0.386889	0.0	0.0	0.0	265.547424	0.316154	2055.0	73.0	106.0	267.0	437.0	501.0	0.038716	0.999013	6344740	6119982	1.00	0.961284	6366463	0.0053	530	-1029.0021	52.4604	6388832

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