work/3599846500_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846500_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846500_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846500_sv1	36836496	67491	0.001832	30068729	0.183725	14995289	0.748786	0.248969	0.868812	0.131188	222	323	476	14542792	0.969824	12634951	1907841	22515051	7486187	354.184702	120.465393	6767767	0.975872	0.936967	0.936967	5515350750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	222451	0.180149	0.0	0.165669	0.222378	0.278365	0.3715	0.857835	1.196318	1.020862	0.910467	1.008681	1.000742	0.9591	1.096565	1.034366	0.913988	0.622482	0.292522	0.405443	0.0	0.0	0.0	319.387864	0.317348	1606.0	88.0	126.0	322.0	523.0	594.0	0.017153	0.998533	6347118	6257259	1.00	0.982847	6366463	0.0051	778	-1795.1657	79.8154	6388832

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