work/3599846501_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846501_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846501_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846501_sv1	31345698	51678	0.001649	25274601	0.193682	12606416	0.745761	0.252194	0.863539	0.136461	215	320	477	12236980	0.970695	10567112	1669868	18848816	6374107	351.486194	123.891075	6071097	0.976543	0.939417	0.939417	4694103000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	188454	0.178147	0.0	0.154867	0.204464	0.257667	0.361711	0.838221	1.185757	1.018302	0.912222	1.014221	1.009239	0.967856	1.106476	1.035575	0.900378	0.606319	0.295707	0.352246	0.0	0.0	0.0	264.505628	0.316918	1870.0	73.0	105.0	266.0	436.0	496.0	0.040684	0.999372	6345917	6107449	1.00	0.959316	6366463	0.0088	605	-1468.8475	126.3761	6388832

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