work/3599846502_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846502_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846502_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846502_sv1	36256140	65776	0.001814	28847429	0.204344	14385213	0.746512	0.251208	0.866537	0.133463	221	323	476	13954058	0.970028	12091712	1862346	21534940	7246713	353.961651	120.761757	7408711	0.976307	0.938284	0.938284	5428554600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	212996	0.173361	0.0	0.163802	0.206549	0.282494	0.3801	0.885258	1.215802	1.030054	0.908787	0.996554	0.985686	0.949073	1.083144	1.018836	0.896399	0.605882	0.291356	0.330211	0.0	0.0	0.0	303.978794	0.314745	1494.0	85.0	122.0	308.0	491.0	556.0	0.020575	0.998688	6346400	6235471	1.00	0.979425	6366463	0.0051	583	-1295.405	58.1275	6388832

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