work/3599846503_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846503_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846503_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846503_sv1	30690636	51944	0.001693	24664711	0.196344	12301434	0.741578	0.256316	0.86616	0.13384	234	334	484	11942675	0.970836	10344273	1598402	18290809	6321958	364.094016	119.186455	6025925	0.976391	0.938535	0.938535	4595803800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	195284	0.097763	0.0	0.122592	0.126849	0.230899	0.345893	0.829553	1.176324	0.991663	0.912823	1.019942	1.024735	0.9967	1.119487	1.048228	0.889732	0.602165	0.30888	0.399328	0.0	0.0	0.0	262.155871	0.362753	1422.0	57.0	91.0	258.0	455.0	517.0	0.065657	0.998316	6364123	5948462	1.00	0.934343	6366463	0.0136	675	-2287.6642	286.3543	6388832

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