work/3599846504_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846504_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846504_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846504_sv1	34079688	56023	0.001644	27942744	0.180076	13938348	0.756506	0.241489	0.867415	0.132585	203	308	465	13569215	0.973517	11770144	1799071	21138849	6747872	339.569342	123.808334	6136944	0.977003	0.940548	0.940548	5103549750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	207177	0.166597	0.0	0.136814	0.203754	0.25361	0.365722	0.862153	1.205444	1.021564	0.90884	1.001894	0.994752	0.957094	1.103592	1.030574	0.920598	0.610755	0.301151	0.331333	0.0	0.0	0.0	292.49683	0.309768	1462.0	83.0	120.0	295.0	475.0	542.0	0.021906	0.998864	6346128	6227002	1.00	0.978094	6366463	0.009	591	-1704.3642	151.1482	6388832

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