work/3599846505_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846505_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846505_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846505_sv1	36915458	64267	0.001741	29619865	0.19763	14772507	0.747027	0.250803	0.864703	0.135297	214	319	476	14336786	0.970505	12397055	1939731	22126835	7428763	350.914414	123.870468	7295593	0.976194	0.93847	0.93847	5527678650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	219246	0.162596	0.0	0.15397	0.205691	0.270274	0.365676	0.863147	1.200263	1.01791	0.906926	1.004661	1.000797	0.966272	1.100827	1.027023	0.902891	0.612042	0.290195	0.367458	0.0	0.0	0.0	310.796863	0.314275	1843.0	86.0	124.0	314.0	508.0	576.0	0.018725	0.998066	6345193	6247249	1.00	0.981275	6366463	0.0079	646	-1868.0032	141.4234	6388832

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