work/3599846506_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846506_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846506_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846506_sv1	36336690	59824	0.001646	29713609	0.18227	14821634	0.749651	0.248335	0.864296	0.135704	214	318	474	14452052	0.975065	12490856	1961196	22274844	7378941	349.545726	123.416153	6623081	0.976978	0.940403	0.940403	5441529900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	222862	0.170548	0.0	0.162676	0.211789	0.260847	0.368085	0.855898	1.188667	1.020264	0.910312	1.006674	0.997251	0.963776	1.11163	1.040535	0.937772	0.628948	0.309984	0.356838	0.0	0.0	0.0	312.252389	0.314503	1564.0	87.0	125.0	315.0	513.0	581.0	0.018183	0.998663	6344574	6250704	1.00	0.981817	6366463	0.0028	602	-1051.5054	23.8167	6388832

2 rows